Publications

2021

• GeNePy3D: a quantitative geometry python toolbox for bioimaging
  
  • Phan Minh-Son
  • Chessel Anatole
  F1000Research, Faculty of 1000, 2021. (10.12688/f1000research.27395.2)
  DOI : 10.12688/f1000research.27395.2
• Drivers of i-DNA Formation in a Variety of Environments Revealed by Four-Dimensional UV Melting and Annealing
  
  • Cheng Mingpan
  • Chen Jielin
  • Ju Huangxian
  • Zhou Jun
  • Mergny Jean-Louis
  Journal of the American Chemical Society, American Chemical Society, 2021, 143, pp.7792-7807. (10.1021/jacs.1c02209)
  DOI : 10.1021/jacs.1c02209
• Fluorescent iron‑sulfur centers: Photochemistry of the PetA Rieske protein from Aquifex aeolicus
  
  • Vos Marten H.
  • Salman Mayla
  • Ramodiharilafy Rivo
  • Liebl Ursula
  Biochimica biophysica acta (BBA) - Bioenergetics, Elsevier, 2021, 1862 (5), pp.148385. (10.1016/j.bbabio.2021.148385)
  DOI : 10.1016/j.bbabio.2021.148385
• Mechanism and dynamics of fatty acid photodecarboxylase
  
  • Sorigué Damien
  • Hadjidemetriou Kyprianos
  • Blangy S.
  • Gotthard G.
  • Bonvalet A.
  • Coquelle Nicolas
  • Samire P.
  • Aleksandrov Alexey
  • Antonucci L.
  • Benachir A.
  • Boutet S.
  • Byrdin Martin
  • Cammarata Marco
  • Carbajo S.
  • Cuine Stephan
  • Doak R.
  • Foucar L.
  • Gorel A.
  • Grünbein M.
  • Hartmann E.
  • Hienerwadel Rainer
  • Hilpert M.
  • Kloos M.
  • Lane T.
  • Légeret B.
  • Legrand P.
  • Li-Beisson Y.
  • Moulin S.
  • Nurizzo D.
  • Peltier G.
  • Schirò Giorgio
  • Shoeman R.
  • Sliwa M.
  • Solinas X.
  • Zhuang B.
  • Barends T.
  • Colletier Jacques-Philippe
  • Joffre M.
  • Royant Antoine
  • Berthomieu C.
  • Weik Martin
  • Domratcheva T.
  • Brettel K.
  • Vos Marten H.
  • Schlichting I.
  • Arnoux Pascal
  • Müller P.
  • Beisson F.
  Science, American Association for the Advancement of Science (AAAS), 2021, 372 (6538), pp.eabd5687. (10.1126/science.abd5687)
  DOI : 10.1126/science.abd5687
• Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain
  
  • Dray Nicolas
  • Mancini Laure
  • Binshtok Udi
  • Cheysson Felix
  • Supatto Willy
  • Mahou Pierre
  • Bedu Sébastien
  • Ortica Sara
  • Than-Trong Emmanuel
  • Krecsmarik Monika
  • Herbert Sébastien
  • Masson Jean-Baptiste
  • Tinevez Jean-Yves
  • Lang Gabriel
  • Beaurepaire Emmanuel
  • Sprinzak David
  • Bally-Cuif Laure
  Cell Stem Cell, Cambridge, MA : Cell Press, 2021, 28 (8), pp.1-16. (10.1016/j.stem.2021.03.014)
  DOI : 10.1016/j.stem.2021.03.014
• Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection
  
  • Bohálová Natália
  • Cantara Alessio
  • Bartas Martin
  • Kaura Patrik
  • Šťastný Jiří
  • Pečinka Petr
  • Fojta Miroslav
  • Mergny Jean‐louis
  • Brázda Václav
  Biochimie, Elsevier, 2021, 186, pp.13-27. (10.1016/j.biochi.2021.03.017)
  DOI : 10.1016/j.biochi.2021.03.017
• Exploration of head-to-tail and head-to-head isomers of a guanine quadruplex platinum-based binder
  
  • Carson Jacob Joel Kirsh
  • Miron Caitlin Elizabeth
  • Luo Jingwei
  • Mergny Jean‐louis
  • van Staalduinen Laura
  • Jia Zongchao
  • Petitjean Anne
  Inorganica Chimica Acta Reviews, Elsevier, 2021, 518, pp.120236. (10.1016/j.ica.2020.120236)
  DOI : 10.1016/j.ica.2020.120236
• Mueller polarimetric imaging for fast macroscopic mapping of microscopic collagen matrix remodeling by smooth muscle cells
  
  • Chashchina Olga
  • Mezouar Hachem
  • Vizet Jérémy
  • Raoux Clothilde
  • Park Junha
  • Ramón-Lozano Clara
  • Schanne-Klein Marie-Claire
  • Barakat Abdul I
  • Pierangelo Angelo
  Scientific Reports, Nature Publishing Group, 2021, 11. (10.1038/s41598-021-85164-y)
  DOI : 10.1038/s41598-021-85164-y
• Ultrafast dynamics of heme distortion in the O2-sensor of a thermophilic anaerobe bacterium
  
  • Petrova Olga N
  • Yoo Byung-Kuk
  • Lamarre Isabelle
  • Selles Julien
  • Nioche Pierre
  • Negrerie Michel
  Communications Chemistry, Nature Research, 2021, 4 (1). (10.1038/s42004-021-00471-9)
  DOI : 10.1038/s42004-021-00471-9
• Ligand Binding to Dynamically Populated G‐Quadruplex DNA
  
  • Aznauryan Mikayel
  • Noer Sofie Louise
  • Pedersen Camilla
  • Mergny Jean‐louis
  • Teulade-Fichou Marie‐paule
  • Birkedal Victoria
  ChemBioChem, Wiley-VCH Verlag, 2021, 22 (10), pp.1811-1817. (10.1002/cbic.202000792)
  DOI : 10.1002/cbic.202000792
• Influence of core extension and side chain nature in targeting G-quadruplex structures with perylene monoimide derivatives
  
  • Busto Natalia
  • García-Calvo José
  • Cuevas José Vicente
  • Herrera Antonio
  • Mergny Jean-Louis
  • Pons Sebastian
  • Torroba Tomás
  • García Begoña
  Bioorganic Chemistry, Elsevier, 2021, 108 (18), pp.104660. (10.1016/j.bioorg.2021.104660)
  DOI : 10.1016/j.bioorg.2021.104660
• Characterization of Light-Induced, Short-Lived Interacting Radicals in the Active Site of Flavoprotein Ferredoxin-NADP + Oxidoreductase
  
  • Zhuang Bo
  • Seo Daisuke
  • Aleksandrov Alexey
  • Vos Marten H.
  Journal of the American Chemical Society, American Chemical Society, 2021, 143 (7), pp.2757-2768. (10.1021/jacs.0c09627)
  DOI : 10.1021/jacs.0c09627
• Effects of sequence and base composition on the CD and TDS profiles of i-DNA
  
  • Iaccarino Nunzia
  • Cheng Mingpan
  • Qiu Dehui
  • Pagano Bruno
  • Amato Jussara
  • Porzio Anna Di
  • Zhou Jun
  • Randazzo Antonio
  • Mergny Jean‐louis
  Angewandte Chemie International Edition, Wiley-VCH Verlag, 2021, 60, pp.10295-10303. (10.1002/anie.202016822)
  DOI : 10.1002/anie.202016822
• Identification of the vibrational marker of tyrosine cation radical using ultrafast transient infrared spectroscopy of flavoprotein systems
  
  • Pirisi Katalin
  • Nag Lipsa
  • Fekete Zsuzsanna
  • Iuliano James N
  • Tolentino Collado Jinnette
  • Clark Ian P
  • Pécsi Ildikó
  • Sournia Pierre
  • Liebl Ursula
  • Greetham Gregory M
  • Tonge Peter J
  • Meech Stephen R
  • Vos Marten H.
  • Lukacs Andras
  Photochemical & Photobiological Sciences, Springer, 2021. (10.1007/s43630-021-00024-y)
  DOI : 10.1007/s43630-021-00024-y
• The lncRNA 44s2 Study Applicability to the Design of 45-55 Exon Skipping Therapeutic Strategy for DMD
  
  • Gargaun Elena
  • Falcone Sestina
  • Sole Guilhem
  • Durigneux Julien
  • Urtizberea Andoni
  • Cuisset Jean Marie
  • Benkhelifa-Ziyyat Sofia
  • Julien Laura
  • Boland Anne
  • Sandron Florian
  • Meyer Vincent
  • Deleuze Jean François
  • Salgado David
  • Desvignes Jean-Pierre
  • Béroud Christophe
  • Chessel Anatole
  • Blesius Alexia
  • Krahn Martin
  • Levy Nicolas
  • Leturcq France
  • Pietri-Rouxel France
  Biomedicines, MDPI, 2021, 9 (2), pp.219. (10.3390/biomedicines9020219)
  DOI : 10.3390/biomedicines9020219
• Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data
  
  • Cheng Mingpan
  • Qiu Dehui
  • Tamon Liezel
  • Ištvánková Eva
  • Víšková Pavlína
  • Amrane Samir
  • Guédin Aurore
  • Chen Jielin
  • Lacroix Laurent
  • Ju Huangxian
  • Trantírek Lukáš
  • Sahakyan Aleksandr B
  • Zhou Jun
  • Mergny Jean‐louis
  Angewandte Chemie International Edition, Wiley-VCH Verlag, 2021, 60, pp.10286-10294. (10.1002/anie.202016801)
  DOI : 10.1002/anie.202016801
• Rapid Evaluation of Novel Therapeutic Strategies Using a 3D Collagen-Based Tissue-Like Model
  
  • Maury Pauline
  • Porcel Erika
  • Mau Adrien
  • Lux François
  • Tillement Olivier
  • Mahou Pierre
  • Schanne-Klein Marie-Claire
  • Lacombe Sandrine
  Frontiers in Bioengineering and Biotechnology, Frontiers, 2021. (10.3389/fbioe.2021.574035)
  DOI : 10.3389/fbioe.2021.574035
• Euryarchaeal genomes are folded into SMC-dependent loops and domains, but lack transcription-mediated compartmentalization
  
  • Cockram Charlotte
  • Thierry Agnès
  • Gorlas Aurore
  • Lestini Roxane
  • Koszul Romain
  Molecular Cell, Cell Press, 2021, 81 (3), pp.459-472.e10. (10.1016/j.molcel.2020.12.013)
  DOI : 10.1016/j.molcel.2020.12.013
• Insights into G-Quadruplex–Hemin Dynamics Using Atomistic Simulations: Implications for Reactivity and Folding
  
  • Stadlbauer Petr
  • Islam Barira
  • Otyepka Michal
  • Chen Jielin
  • Monchaud David
  • Zhou Jun
  • Mergny Jean-Louis
  • Šponer Jiří
  Journal of Chemical Theory and Computation, American Chemical Society, 2021, 17 (3), pp.1883 - 1899. (10.1021/acs.jctc.0c01176)
  DOI : 10.1021/acs.jctc.0c01176
• Deinking Effect of Paper-Cartons Wastes on Calorifique Value of Combustibles Briquettes
  
  • Dzokom Alexis
  • Koda Joël Tize
  • Darman Roger Djoulde
  International Journal of Advances in Engineering and Management (IJAEM), 2021, 3 (7), pp.3451-3458. (10.35629/5252-030734513458)
  DOI : 10.35629/5252-030734513458
• Human Papillomavirus G-Rich Regions as Potential Antiviral Drug Targets
  
  • Carvalho Josué
  • Lopes-Nunes Jéssica
  • Campello Maria Paula Cabral
  • Paulo António
  • Milici Janice
  • Meyers Craig
  • Mergny Jean-Louis
  • Salgado Gilmar
  • Queiroz João
  • Cruz Carla
  Nucleic Acid Therapeutics, Mary Ann Liebert, Inc. publishers, 2021, 31 (1), pp.68-81. (10.1089/nat.2020.0869)
  DOI : 10.1089/nat.2020.0869
• Targeting nucleolin by RNA G-quadruplex-forming motif
  
  • Figueiredo Joana
  • Miranda André
  • Lopes-Nunes Jéssica
  • Carvalho Josué
  • Alexandre Daniela
  • Valente Salete
  • Mergny Jean‐louis
  • Cruz Carla
  Biochemical Pharmacology, Elsevier, 2021, 189, pp.114418. (10.1016/j.bcp.2021.114418)
  DOI : 10.1016/j.bcp.2021.114418
• Cyclodipeptide synthases of the NYH subfamily recognize tRNA using an α-helix enriched with positive residues
  
  • Croitoru Anastasia
  • Babin Morgan
  • Myllykallio Hannu
  • Gondry Muriel
  • Aleksandrov Alexey
  Biochemistry, American Chemical Society, 2021, 60 (1), pp.64-76. (10.1021/acs.biochem.0c00761)
  DOI : 10.1021/acs.biochem.0c00761
• Gene level resolution of bacteria and archaea genome folding
  
  • Cockram Charlotte
  • Thierry Agnès
  • Lestini Roxane
  • Koszul Romain
  , 2021.
• Core–Shell Pure Collagen Threads Extruded from Highly Concentrated Solutions Promote Colonization and Differentiation of C3H10T1/2 Cells
  
  • Picaut Lise
  • Trichet Lea
  • Hélary Christophe
  • Ducourthial Guillaume
  • Bonnin Marie-Ange
  • Haye Bernard
  • Ronsin Olivier
  • Schanne-Klein Marie-Claire
  • Duprez Delphine
  • Baumberger Tristan
  • Mosser Gervaise
  ACS Biomaterials Science and Engineering, ACS, 2021. (10.1021/acsbiomaterials.0c01273)
  DOI : 10.1021/acsbiomaterials.0c01273